COMe: The Ontology of Bioinorganic Proteins

Topics:
Chemical
Tags:
BIM,
Management,
Molecule,
Ontology,
Protein,
Strategy
Source:
BioMed Central

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Overview: COMe (Co-Ordination of Metals) represents the ontology for bioinorganic and other small molecule centers in complex proteins. COMe consists of three types of entities: 'bioinorganic motif' (BIM), 'molecule' (MOL), and 'complex proteins' (PRX), with each entity being assigned a unique identifier. A BIM consists of at least one centre (metal atom, inorganic cluster, organic molecule) and two or more endogenous and/or exogenous ligands. BIMs are represented as one-dimensional (1-D) strings and 2-D diagrams. The complex proteins in COMe are subdivided into three categories: metalloproteinase, organic prosthetic group proteins and modified amino acid proteins.

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Format: PDF | Size: 298KB | Date: Feb 2004 | Pages: 10

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